Please use this identifier to cite or link to this item: https://repository.udca.edu.co/handle/11158/2411
Title: Semi-empirical quantum evaluation of peptide – MHC class II binding
Authors: González, Ronald
Suárez, Carlos F.
Bohórquez, Hugo J.
Patarroyo, Manuel A.
Patarroyo, Manuel E.
Issue Date: 2017
Citation: Ronald González, Carlos F. Suárez, Hugo J. Bohórquez, Manuel A. Patarroyo, Manuel E. Patarroyo, Semi-empirical quantum evaluation of peptide – MHC class II binding, Chemical Physics Letters, Volume 668, 2017, Pages 29-34, ISSN 0009-2614, https://doi.org/10.1016/j.cplett.2016.12.015
Series/Report no.: Chemical Physics Letters;Vol. 668, Ene. 16 2017 páginas 29-34
Abstract: Peptide presentation by the major histocompatibility complex (MHC) is a key process for triggering a specific immune response. Studying peptide-MHC (pMHC) binding from a structural-based approach has potential for reducing the costs of investigation into vaccine development. This study involved using two semi-empirical quantum chemistry methods (PM7 and FMO-DFTB) for computing the binding energies of peptides bonded to HLA-DR1 and HLA-DR2. We found that key stabilising water molecules involved in the peptide binding mechanism were required for finding high correlation with IC50 experimental values. Our proposal is computationally non-intensive, and is a reliable alternative for studying pMHC binding interactions.
URI: https://www.scopus.com/search/form.uri?display=basic
Appears in Collections:CCB. Artículos indexados en Scopus

Files in This Item:
File Description SizeFormat 
1-s2.0-S0009261416309642-main.pdf
  Restricted Access
1,02 MBAdobe PDFView/Open Request a copy


This item is licensed under a Creative Commons License Creative Commons